PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135703.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 427aa    MW: 46309.9 Da    PI: 6.8009
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-063163551054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  XP_009135703.1 316 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 355
                     56889999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.779306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0012312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.55E-6316360No hitNo description
SuperFamilySSF474591.96E-11316370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-10320364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFD EKLHSSLATD HHLQMIGLGL  60
SSQSPVDQWN QPLLGDSKAE TSFGVMLQEN LNLDATSNAN AIQESDSSNH QALWRDTQIN  120
NSDFKPQLNM TSSNRGFFLE HQFSPHGSSS TDSSTVTCQG FAVDNSLYGT ATTPSSSSAM  180
FHQGAGFNLP GSSDQQPLRN HQQPNLGYGN YDQLASTWFS RSSPPKPNSP LRFSNNATFW  240
NPAATAGNVG PTHHDASSNF FPALQPPQIH APSFDKQKSI TKVPDSRSNE VKKGGADQPA  300
AKRAKSEAPS PSPASKVRKE KMGDRIAALQ QLVSPFGKTD AASVLSEAIE YIKFLHQQVS  360
ALSNPYMKSG ASLQHQQMSH HHKELEVSEE PDLRSRGLCL VPVSSIFPVT QDTTVDFWTP  420
TFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135703.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A398A5E90.0A0A398A5E9_BRACM; Uncharacterized protein
STRINGBo3g076150.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]