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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 428aa MW: 46466.1 Da PI: 6.9113 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 6.1e-06 | 317 | 356 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++++ L++l+ + +K + a++L +A+eYIk L XP_009135702.1 317 KVRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 356 56889999***********98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.779 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0012 | 313 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-11 | 317 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.57E-6 | 317 | 361 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.8E-10 | 321 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MGDHHDFINS GSWWKVSSSS STSSSMRASS IVSGGSDVFD EKLHSSLATD HHLQMIGLGL 60 SSQSPVDQWN QPLLRGDSKA ETSFGVMLQE NLNLDATSNA NAIQESDSSN HQALWRDTQI 120 NNSDFKPQLN MTSSNRGFFL EHQFSPHGSS STDSSTVTCQ GFAVDNSLYG TATTPSSSSA 180 MFHQGAGFNL PGSSDQQPLR NHQQPNLGYG NYDQLASTWF SRSSPPKPNS PLRFSNNATF 240 WNPAATAGNV GPTHHDASSN FFPALQPPQI HAPSFDKQKS ITKVPDSRSN EVKKGGADQP 300 AAKRAKSEAP SPSPASKVRK EKMGDRIAAL QQLVSPFGKT DAASVLSEAI EYIKFLHQQV 360 SALSNPYMKS GASLQHQQMS HHHKELEVSE EPDLRSRGLC LVPVSSIFPV TQDTTVDFWT 420 PTFGGTFR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135702.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118054 | 0.0 | AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14. | |||
GenBank | BT008580 | 0.0 | BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135702.1 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X1 | ||||
Swissprot | Q8GXT3 | 0.0 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A398A9F7 | 0.0 | A0A398A9F7_BRACM; Uncharacterized protein | ||||
STRING | Bo3g076150.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4024 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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