 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009135630.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C3H |
| Protein Properties |
Length: 355aa MW: 39489.4 Da PI: 7.6075 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009135630.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 23 | 1.4e-07 | 68 | 93 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+ C f G C+ G+ C+FaHg+
XP_009135630.1 68 YKTRMCVKFKS-GACRNGELCNFAHGM 93
89999**9999.*************95 PP
|
| 2 | zf-CCCH | 18.7 | 3.1e-06 | 158 | 172 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F+H
XP_009135630.1 158 F-GeECPYGDRCNFIH 172
5.449*********** PP
|
| 3 | zf-CCCH | 37.9 | 3e-12 | 238 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC f + G+C++Gd+C+FaHg+
XP_009135630.1 238 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 263
8**********.*************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-14 | 65 | 100 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.03E-8 | 66 | 98 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.436 | 67 | 94 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.4E-4 | 67 | 93 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-4 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.455 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.22E-6 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0036 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-8 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-8 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 235 | 266 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.713 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.9E-7 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.3E-10 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MDSSYSDSRP YGVWNQTQMV DSMSNDQSES QTMPQLKRPK LVDDNNTSWN VPSSNAPPVN 60
KGTANIFYKT RMCVKFKSGA CRNGELCNFA HGMEDLRQPP SNWQEIVGPP VQDREKERER 120
ERERLSSVSG GNNSNNSGNW EDDQKIILRM KLCRKFCFGE ECPYGDRCNF IHEDLSKFRE 180
ENGKLRESLA ISVVDPLSVE NGVVAFSQQV EVVRQGGVPL PVPAPLNNGV GGVKTVFWKT 240
RLCGKFEKGQ CPFGDNCHFA HGQAELLQHS VGRVEGEALN AVAASVSKPM VVPANEAFAM 300
KPTAQVTADS SGLNDEGRRK KCLLKWSDSK KINRIYGDWI DDLPVGQKST KPVES
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353521 | 1e-107 | AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16. |
