PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009135626.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 355aa MW: 39296.7 Da PI: 9.8462

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009135626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.3	6.7e-13	281	331	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rrk+kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ XP_009135626.1 281 RRQRRKIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEM 331 69*************************************998766665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-10	277	338	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	279	330	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-12	281	330	No hit	No description
Pfam	PF00170	1.3E-10	281	332	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.11E-9	281	330	No hit	No description
CDD	cd14707	5.40E-24	281	333	No hit	No description
PROSITE pattern	PS00036	0	284	299	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGTHINFNSL GGGGSYQMKP TDSPNPLARQ SSVYSLTFDE LQSTFGGPGK DLGSMNMDEL 60 LKSIWTAEEA QAMTSSAATA VAQHGGGNLQ RQGSLTLPRT INQKTVDEVW KFLITKDGEM 120 GGSSNGESNA QQTLGEMKIE DFLFRAGVVR EDNNEFYGNN GAAEGLGFGF GQLNQNNISF 180 NGTNDSMILN QPQQQSHPQQ QHQHQRLPQT IFPKQGNVEF TAHVGMVNNY NGLGSFRGEG 240 VKIGATSPGT SSGENNSFSP VPYVLNRGRR SHTGVEKVIE RRQRRKIKNR ESAARSRARK 300 QAYTLELEAE IEKLKKVNQE LQRKQAEMME MQKNEVNEPR GSKRQCLRRT LTGPW

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGTHINFNSL GGGGSYQMKP TDSPNPLARQ SSVYSLTFDE LQSTFGGPGK DLGSMNMDEL  60
LKSIWTAEEA QAMTSSAATA VAQHGGGNLQ RQGSLTLPRT INQKTVDEVW KFLITKDGEM  120
GGSSNGESNA QQTLGEMKIE DFLFRAGVVR EDNNEFYGNN GAAEGLGFGF GQLNQNNISF  180
NGTNDSMILN QPQQQSHPQQ QHQHQRLPQT IFPKQGNVEF TAHVGMVNNY NGLGSFRGEG  240
VKIGATSPGT SSGENNSFSP VPYVLNRGRR SHTGVEKVIE RRQRRKIKNR ESAARSRARK  300
QAYTLELEAE IEKLKKVNQE LQRKQAEMME MQKNEVNEPR GSKRQCLRRT LTGPW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009135626.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ971974	1e-101	JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135624.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_009135625.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_009135626.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q2	1e-160	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	M4CC12	0.0	M4CC12_BRARP; Uncharacterized protein
STRING	Bra001742.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	1e-139	ABRE binding factor 4

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]