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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 355aa MW: 39296.7 Da PI: 9.8462 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.3 | 6.7e-13 | 281 | 331 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rrk+kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ XP_009135625.1 281 RRQRRKIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEM 331 69*************************************998766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.1E-10 | 277 | 338 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 279 | 330 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.8E-12 | 281 | 330 | No hit | No description |
Pfam | PF00170 | 1.3E-10 | 281 | 332 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.11E-9 | 281 | 330 | No hit | No description |
CDD | cd14707 | 5.40E-24 | 281 | 333 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 284 | 299 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGTHINFNSL GGGGSYQMKP TDSPNPLARQ SSVYSLTFDE LQSTFGGPGK DLGSMNMDEL 60 LKSIWTAEEA QAMTSSAATA VAQHGGGNLQ RQGSLTLPRT INQKTVDEVW KFLITKDGEM 120 GGSSNGESNA QQTLGEMKIE DFLFRAGVVR EDNNEFYGNN GAAEGLGFGF GQLNQNNISF 180 NGTNDSMILN QPQQQSHPQQ QHQHQRLPQT IFPKQGNVEF TAHVGMVNNY NGLGSFRGEG 240 VKIGATSPGT SSGENNSFSP VPYVLNRGRR SHTGVEKVIE RRQRRKIKNR ESAARSRARK 300 QAYTLELEAE IEKLKKVNQE LQRKQAEMME MQKNEVNEPR GSKRQCLRRT LTGPW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135625.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ971974 | 1e-101 | JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135624.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Refseq | XP_009135625.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Refseq | XP_009135626.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
Swissprot | Q9M7Q2 | 1e-160 | AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | M4CC12 | 0.0 | M4CC12_BRARP; Uncharacterized protein | ||||
STRING | Bra001742.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19290.1 | 1e-139 | ABRE binding factor 4 |
Publications ? help Back to Top | |||
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