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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009135445.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 295aa MW: 33554.6 Da PI: 8.6795 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009135445.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 156.7 | 9.8e-49 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrF Ptdeel+veyL++k++g++++l + i+e+d+yk++ w Lp+k+ +ek+wyfFs+rd+ky++g+r+nr + sgyWkatg+dk + +
XP_009135445.1 14 LPPGFRFYPTDEELMVEYLCRKAAGHDFSL-QLIAEIDLYKFDAWILPSKALFGEKDWYFFSPRDRKYPNGSRPNRCAGSGYWKATGTDKVIST- 106
79***************************9.89***************8777899**********************************99999. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
+g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
XP_009135445.1 107 EGRRVGVKKALVFYVGKAPKGTKTNWIMHEYRL 139
9999***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MGIQELDPLT QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDAWILP 60 SKALFGEKDW YFFSPRDRKY PNGSRPNRCA GSGYWKATGT DKVISTEGRR VGVKKALVFY 120 VGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKDV YNSNLMTREY 180 SHNGSSTSYS SHQYDDVFED KTGFLNLVRE PSFDWVNSTG HNSVPELRLR HNVPSVRYGD 240 LGVKTSEEGN KMHEQAEVIP RFKNSGVLSY DQGSSVDPVN GFGHSGQQPS GFGFM
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-117 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:15319476}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ670121 | 1e-178 | KJ670121.1 Brassica napus NAC transcription factor 55-1 (NAC55-1.1) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Zheng XY, et al.
Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation. Cell Host Microbe, 2012. 11(6): p. 587-96 [PMID:22704619] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhu X, et al.
Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] - Gimenez-Ibanez S, et al.
JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] - Fu Y,Ma H,Chen S,Gu T,Gong J
Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055. J. Exp. Bot., 2018. 69(3): p. 579-588 [PMID:29253181]
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