PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135370.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 352aa    MW: 39550.9 Da    PI: 4.6466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18115164255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r ++ +g+W+AeIrdp++     r +lg+f taeeAa+a++aa+++++g
  XP_009135370.1 115 QYRGIRLRP-WGKWAAEIRDPRK---GSREWLGTFETAEEAARAYDAAARRIRG 164
                     69*******.**********954...39***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-15115173No hitNo description
Gene3DG3DSA:3.30.730.101.8E-31115173IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22115173IPR016177DNA-binding domain
PROSITE profilePS5103223.894115172IPR001471AP2/ERF domain
SMARTSM003802.7E-36115178IPR001471AP2/ERF domain
PfamPF008479.5E-12116164IPR001471AP2/ERF domain
PRINTSPR003671.5E-10116127IPR001471AP2/ERF domain
PRINTSPR003671.5E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCGGAIISEF IPPPKSRRVT SEFIWPDLKN LKKKSRKRSH FFDLDNEFEA DFKGFKDDDS  60
SFECEDGFDV KPFAFTAATK PVASLPTNVA STGSVSDKKA VESDEKSGKR KRKNQYRGIR  120
LRPWGKWAAE IRDPRKGSRE WLGTFETAEE AARAYDAAAR RIRGDKAKVN FPEEVISSPK  180
KPVAKPNQTP TLVQPPTHVS QYCNNNSFDS MGHDSLSFVE EKPQIYNNQF FDVGQYFNSD  240
QGSNSFDCSE FGWSDHAPKT PPEISSMVVN NNQATFAEQT IAAKKVKLNS EDETSDNDDL  300
MVYLDNALWE SPLEMEAMLG VDAAATGVAQ EEENPMELWS LDDINFMLDG DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21115175263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.82580.0bud| flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892530.0AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135370.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like isoform X1
SwissprotQ9LUM41e-147RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLM4CBG10.0M4CBG1_BRARP; Uncharacterized protein
STRINGBra001541.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-135related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  3. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  4. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  5. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]