PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009135363.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 118aa MW: 13266.4 Da PI: 8.8983

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009135363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.1	1.4e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+kdC+++pyfp ++p kf ++h+++Ga v+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq +++++++ la XP_009135363.1 5 RCAACKYLRRRCPKDCIFSPYFPPSDPDKFSCIHRIYGAGDVSKMLQQLPVQTRAEAVESLSFEAKCRVEDPVYGCVGIISLLQTHIQKTQTLLA 99 6********************************************************************************************99 PP DUF260 96 llkee 100 ++++e XP_009135363.1 100 KTQAE 104 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.414	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-38	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MNPKRCAACK YLRRRCPKDC IFSPYFPPSD PDKFSCIHRI YGAGDVSKML QQLPVQTRAE 60 AVESLSFEAK CRVEDPVYGC VGIISLLQTH IQKTQTLLAK TQAEIAVAQT KHSQHTNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-36	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-36	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009135363.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473847	1e-106	AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBank	DQ056609	1e-106	DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135363.1	2e-84	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	3e-71	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A291LR10	4e-81	A0A291LR10_BRARR; Transcription factor LBD23
STRING	Bo3g065910.1	2e-79	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-73	LOB domain-containing protein 24