PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 531aa MW: 59211.7 Da PI: 9.0543 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_009135333.1 101 FVCEICNKGFQRDQNLQLHKRGH 123 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.28E-5 | 100 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 100 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.907 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.6E-5 | 101 | 123 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 143 | 173 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.28E-5 | 173 | 198 | No hit | No description |
SMART | SM00355 | 180 | 178 | 198 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MMSKDILLHQ QVQQQQQEEN MSNLTSASGD QTSVSSGNRT EASGSNYFPH HQQQQQQQQQ 60 QQFFVPESQP QKKRRNQPGN PDPESEVIAL SPKTLMARNR FVCEICNKGF QRDQNLQLHK 120 RGHNLPWKLK QRSNKEVIRK KVYVCPEASC VHHDPTRALG DLTGIKKHFC RKHGDKKWKC 180 DKCSKKYAVQ SDCKAHSKTC GTKEYRCDCG TIFSRRDSFT THRAFCEALA KETAREVVIP 240 QEQNHQPNPI LVHQSTFHHQ HHHQAQPNMN FSSSSPSSHN IINTLHFEIN NNGTNNSNTS 300 SNHLHTFSVK KEQQQSNDHI INYHHQNIPP WLAPQDLTFS NPNPNNGGGG LFSLAASPAM 360 SATALLQKAA QMGSKKTPPL PPTTDFERSA HHNTLTTTMA AMMTSPSGYI SSNNNNQVLF 420 QGYNASDFDH HGGEEAFDDT FSAFLRTNAD TTTAGSDKKK SGGGGGVGEG LTRDFLGIRP 480 LMSHNEILSI AGLGNCISGA ASNQLHPKPW QGTQVGSTKD RDASRFAWWH V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-29 | 174 | 235 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-29 | 174 | 235 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 140 | KLKQRSNKEVIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135333.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135327.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Refseq | XP_009135328.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Refseq | XP_009135329.1 | 0.0 | PREDICTED: protein indeterminate-domain 11-like isoform X1 | ||||
Swissprot | Q9LRW7 | 0.0 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | M4CBE3 | 0.0 | M4CBE3_BRARP; Uncharacterized protein | ||||
STRING | Bra001523.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 0.0 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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