PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 432aa MW: 48349.8 Da PI: 5.6359 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.5 | 2.3e-31 | 234 | 288 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_009135276.1 234 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 288 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.961 | 231 | 291 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 232 | 289 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-16 | 233 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-24 | 234 | 289 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-8 | 236 | 287 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 324 | 371 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MNRHRLVSTA QDECNKGLGQ ACSSSLSPVH NFLNLQPENR NSPFIRSHSP DSPWPKNSPQ 60 GTFSRSSTFC TNLYISSSST SESQKHLGNT LPFLPDPSTN SQPPSAVESA RSPSIFSEDM 120 SNPFDGDNTL VKDFFNLSGD ACSDGAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS 180 ETPRLDEIYE TPLASSSNPV TGLSQTQRSL SGGMSIEVVL SHPSPGSAAA SNHKPRMRWT 240 PELHESFLKS VDKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK HIPEKKEEKR 300 NVNTEEKKLA LSNNEAAERK KGAMQLTEAL RMQMEVQKQL HEQLEVQRVL QLRIEEHAKY 360 LEKMLEEQRK TGMLMSSSSS QTSDCQNMSK TEVSSLSQPK NIASETEDDK CESPQKRRKV 420 ENNTESEDPE ER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135276.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135275.1 | 0.0 | PREDICTED: myb family transcription factor PHL6-like isoform X1 | ||||
Refseq | XP_018513440.1 | 0.0 | PREDICTED: myb family transcription factor PHL6-like isoform X1 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A398A787 | 0.0 | A0A398A787_BRACM; Uncharacterized protein | ||||
STRING | Bo3g065290.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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