PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009135065.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 335aa MW: 36718.1 Da PI: 7.2123

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009135065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W++eEd l ++v+++G+++W++ ar ++ gRt+k+c++rw + XP_009135065.1 10 KVAWSAEEDVVLSNLVEKFGPRNWSLLARSVP-GRTGKSCRLRWCNQ 55 568***************************.*********985 PP
2	Myb_DNA-binding	49.1	1.3e-15	62	104	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+++T+ Ed+ ++ a+ +G++ W+ Ia+ ++ gRt++ +k++w+ XP_009135065.1 62 RNPFTEVEDQAIITAHGIHGNK-WSVIAKLLP-GRTDNAIKNHWN 104 789*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.693	5	60	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-30	8	103	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	9	58	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-15	10	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-24	12	63	IPR009057	Homeodomain-like
CDD	cd00167	1.14E-13	12	54	No hit	No description
PROSITE profile	PS51294	19.683	61	111	IPR017930	Myb domain
SMART	SM00717	5.2E-15	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	62	104	IPR001005	SANT/Myb domain
CDD	cd00167	8.66E-12	64	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-22	64	110	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGRGKERVK VAWSAEEDVV LSNLVEKFGP RNWSLLARSV PGRTGKSCRL RWCNQLDPSL 60 KRNPFTEVED QAIITAHGIH GNKWSVIAKL LPGRTDNAIK NHWNATLSRR CMDFEMLTTN 120 NLVREDSGFD RTMNTIAASS EATFSSGGGG HVTTPLVSSD GKEATSMDVS EEQCEDKTNE 180 EGNNDPPTLS RPVARLSSFN AYNHMEGSSF SKFQSCKQDA AMLRLLEGAY SERFVPQKCG 240 HGCCSDNPVN ISQKNSLLGP EFVDHLEPPT FPSYELAAIA TEISSLAWLR SGLESSSVRA 300 MEEAAGRLRP QGSRGHRDHC LASKQGKSIT NVLST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-35	7	110	1	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.32078	1e-112	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009135065.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189394	0.0	AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135065.1	0.0	PREDICTED: myb protein-like
Swissprot	Q42575	1e-173	MYB1_ARATH; Transcription factor MYB1
TrEMBL	M4CAU4	0.0	M4CAU4_BRARP; Uncharacterized protein
STRING	Bra001323.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-175	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]