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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134989.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CO-like | ||||||||
Protein Properties | Length: 351aa MW: 38638.5 Da PI: 5.4519 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.1e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C++++ +lC +C + H+ H++ XP_009134989.1 4 MCDFCGDQRSMVYCRSDSACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 26.4 | 1.4e-08 | 46 | 90 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C++++ ++++ C + ++ lC++C ++H++ H++++ XP_009134989.1 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnstssndHKRQT 90 68*****************************88899999999876 PP | |||||||
3 | CCT | 60.5 | 5.6e-21 | 294 | 337 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ XP_009134989.1 294 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 337 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.855 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.19E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.9E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.513 | 43 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.45E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 0.27 | 48 | 91 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 9.5E-16 | 294 | 336 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.338 | 294 | 336 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGYMCDFCGD QRSMVYCRSD SACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNS TSSNDHKRQT ISCYSGCPSS SELASIWSFC SELAGESACE 120 QEMGMMNIDD DGQTKENCNE DKKDETSSAA QATNASFAKD VGVCEDDFYG NLGMDEVDLA 180 LDNYEELFGT AFNTSVHLFG QGGVDSLFQK HQQAAAPEGG NLVQPAESND DSFMSSKTEP 240 IICYTSKPAH SNISFSGVTG ESSAGDFQEC GASSSVQLTG EPPWHPQTSQ SVTRNNAVMR 300 YKEKKKARKF DKRVRYASRK ARADVRRRVK GRFVKAGEAY DYDPLTPTRS Y |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31941 | 1e-131 | leaf| silique |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134989.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237331 | 1e-85 | AC237331.1 Arabidopsis lyrata clone JGIFAFI-57H17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134989.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_018512576.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | M4CAN5 | 0.0 | M4CAN5_BRARP; Uncharacterized protein | ||||
STRING | Bra001264.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |