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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009134682.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
LBD |
Protein Properties |
Length: 259aa MW: 27743.8 Da PI: 8.2672 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009134682.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 94.7 | 1e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+
XP_009134682.1 4 SCNGCRVLRKGCSDDCSIRPCLswiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQA 98
6********************************************************************************************** PP
DUF260 91 kaelallke 99
++e+++ +e
XP_009134682.1 99 AVEAVMKGE 107
**9988776 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSDDCS IRPCLSWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQAAV EAVMKGEPIT EMATDAATNG 120 QGPPLKMYDI RHISKDESSA AAAAAATGST DLKRPKPRRA KRVAGVAKPS ESEEKEASHV 180 SSLSHQSEVV AAQEGESNIS EVMTFSPPAV QSSGEIKLDL TLGLEPVSHA CNVVPLKKRK 240 IGAFATCQED IPCKTELKL
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 153 | 162 | RPKPRRAKRV |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |