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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 320aa MW: 35694.4 Da PI: 7.2645 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.4 | 4.4e-33 | 59 | 187 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl+ ak++i+el+ ++ s+++++ ++++s + ++ + XP_009134647.1 59 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNVAKEEIDELPPLPVSPETFTlfNHHQSFLNLGQRPGQdptqlg 153 689*************************************************************9999977776666666665544333567777 PP TCP 89 .......kaaksaakskksqksaasalnlakesr 115 ++++++ +++++++ ++ ++a++++ XP_009134647.1 154 fkingcvEESTTTSREENNNERGEKDVSFANNHH 187 7777776333333333333333333344444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.2E-29 | 61 | 178 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.275 | 61 | 119 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MDTGPWKDTN DDVSGQTRTR REGESEEAVA TTKRPATISS SSSWMKSKDP RIVRVSRAFG 60 GKDRHSKVCT LRGLRDRRVR LSVPTAIQLY DLQERLGLDQ PSKAVDWLLN VAKEEIDELP 120 PLPVSPETFT LFNHHQSFLN LGQRPGQDPT QLGFKINGCV EESTTTSREE NNNERGEKDV 180 SFANNHHIGS YGTYHNMEHH HQQHSSFQAD YHQHQLHSLV PFPSQFLVCP MTTLSTTTTT 240 TQSLFPSSSS AGSWTMETTD PRRMVSHFQM PLMGSSSSSA SQNISTLYSL LHGSSSNNGS 300 SNRMSSVQLN QTSRGSDNPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 66 | 120 | 1 | 55 | Putative transcription factor PCF6 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, buds, flowers and immature siliques, and, to a lower extent, in roots. {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134647.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB014465 | 0.0 | AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds. | |||
GenBank | ATAC009755 | 0.0 | AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence. | |||
GenBank | ATAC011664 | 0.0 | AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence. | |||
GenBank | BT001982 | 0.0 | BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds. | |||
GenBank | BT008839 | 0.0 | BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134647.1 | 0.0 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
Refseq | XP_009134648.1 | 0.0 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
Refseq | XP_009134649.1 | 0.0 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
Refseq | XP_018513324.1 | 0.0 | PREDICTED: transcription factor TCP13-like isoform X1 | ||||
Swissprot | Q9S7W5 | 1e-167 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A398A2Q5 | 0.0 | A0A398A2Q5_BRACM; Uncharacterized protein | ||||
STRING | Bo3g055460.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-139 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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