 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009134548.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bHLH |
| Protein Properties |
Length: 548aa MW: 62148.7 Da PI: 7.6875 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009134548.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 15.9 | 2.3e-05 | 370 | 403 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
N++f+ Lr ++P+ + ++K eiL +++Y+++L+
XP_009134548.1 370 NEKFSVLRAMVPTvN------EVDKEEILNNTIKYLQELE 403
9************55......8***************995 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MSLTMDDGAE APRGRRIRRN SLLSKQLAVA VKSVRWSYAI FWSSSPTQSG VLEWGEGCYN 60
GELKKRKKRY EVHYKHVLQR SNQLRKLYLC MREGDSTNTI STTDDDDGYH NCNSKTSMLL 120
SPDDLSDEEW YYVVSMSYVF SPSQCLPGRA LATGETIWLC NAQYADSKLF SRSLLARSAS 180
IQTVVCFPYL GGVIELGVTE LISEDPSLLR HIKSCLLETS KPDCPSNDFT APQDNDDDKK 240
NQMKIKISEV NSALQENQQI QFGISDLMLD EDLHYKTTVS TLLKYAADKS KMKNSHHRQP 300
VLVSSNSGSS FLRWKQPNSN PLLKHSNSQN VLRKILHDVP LMHSIDTKRM STNKMFGLNQ 360
DDPSVKRKEN EKFSVLRAMV PTVNEVDKEE ILNNTIKYLQ ELEERVEELE SCMGSVNFVG 420
KQRKTKKSLN DSVLIEETSG NYDDSTNIDG NSGETDQVTV LRDETHLRVK LKETEVVMEV 480
RCSYRDYIVA DIMETLSKLH MDAFSVRSHT LNGFLTLNLK AKLRGAAVAS VGMIKRELRR 540
VIGLCIMC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4rqw_A | 6e-13 | 23 | 216 | 9 | 192 | Transcription factor MYC3 |
| 4rqw_B | 6e-13 | 23 | 216 | 9 | 192 | Transcription factor MYC3 |
| 4rs9_A | 6e-13 | 23 | 216 | 9 | 192 | Transcription factor MYC3 |
| 4yz6_A | 6e-13 | 23 | 216 | 9 | 192 | Transcription factor MYC3 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493664 | 0.0 | AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480. |
| GenBank | AF251697 | 0.0 | AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds. |
