PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009134547.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 708aa MW: 80803.2 Da PI: 8.7714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009134547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	370	403	17	55
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f+ Lr ++P+ + ++K eiL +++Y+++L+ XP_009134547.1 370 NEKFSVLRAMVPTvN------EVDKEEILNNTIKYLQELE 403 9**********55......8*************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.8E-50	23	215	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.724	353	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-6	363	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-8	368	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-8	370	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF49562	2.49E-10	543	653	IPR000008	C2 domain
Gene3D	G3DSA:2.60.40.150	2.2E-8	543	654	IPR000008	C2 domain
Pfam	PF00168	8.8E-7	544	621	IPR000008	C2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MSLTMDDGAE APRGRRIRRN SLLSKQLAVA VKSVRWSYAI FWSSSPTQSG VLEWGEGCYN 60 GELKKRKKRY EVHYKHVLQR SNQLRKLYLC MREGDSTNTI STTDDDDGYH NCNSKTSMLL 120 SPDDLSDEEW YYVVSMSYVF SPSQCLPGRA LATGETIWLC NAQYADSKLF SRSLLARSAS 180 IQTVVCFPYL GGVIELGVTE LISEDPSLLR HIKSCLLETS KPDCPSNDFT APQDNDDDKK 240 NQMKIKISEV NSALQENQQI QFGISDLMLD EDLHYKTTVS TLLKYAADKS KMKNSHHRQP 300 VLVSSNSGSS FLRWKQPNSN PLLKHSNSQN VLRKILHDVP LMHSIDTKRM STNKMFGLNQ 360 DDPSVKRKEN EKFSVLRAMV PTVNEVDKEE ILNNTIKYLQ ELEERVEELE SCMGSVNFVG 420 KQRKTKKSLN DSVLIEETSG NYDDSTNIDG NSGETDQVTV LRDETHLRVK LKETEVVMEV 480 RCSYRDYIVA DIMETLSKLH MDAFSVRSHT LNGFLTLNLK AKLRGAAVAS VGMIKRELRR 540 VIGRPVYYVL IQCGTKEYRS KLSKGHNDNA LWNQKFVFDF PMSQWKKLTH IKFKTMDKEL 600 FKDGGFVGET IIDLKGIITE GGDRGYMEVK PAPYNVVLDD DTFKGVLKLG FRFTAADKLR 660 RKAWEQKIEG KNSEEAMNST TLTLMKVPLL RFLLYCFQKT TKYQLKDN

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MSLTMDDGAE APRGRRIRRN SLLSKQLAVA VKSVRWSYAI FWSSSPTQSG VLEWGEGCYN  60
GELKKRKKRY EVHYKHVLQR SNQLRKLYLC MREGDSTNTI STTDDDDGYH NCNSKTSMLL  120
SPDDLSDEEW YYVVSMSYVF SPSQCLPGRA LATGETIWLC NAQYADSKLF SRSLLARSAS  180
IQTVVCFPYL GGVIELGVTE LISEDPSLLR HIKSCLLETS KPDCPSNDFT APQDNDDDKK  240
NQMKIKISEV NSALQENQQI QFGISDLMLD EDLHYKTTVS TLLKYAADKS KMKNSHHRQP  300
VLVSSNSGSS FLRWKQPNSN PLLKHSNSQN VLRKILHDVP LMHSIDTKRM STNKMFGLNQ  360
DDPSVKRKEN EKFSVLRAMV PTVNEVDKEE ILNNTIKYLQ ELEERVEELE SCMGSVNFVG  420
KQRKTKKSLN DSVLIEETSG NYDDSTNIDG NSGETDQVTV LRDETHLRVK LKETEVVMEV  480
RCSYRDYIVA DIMETLSKLH MDAFSVRSHT LNGFLTLNLK AKLRGAAVAS VGMIKRELRR  540
VIGRPVYYVL IQCGTKEYRS KLSKGHNDNA LWNQKFVFDF PMSQWKKLTH IKFKTMDKEL  600
FKDGGFVGET IIDLKGIITE GGDRGYMEVK PAPYNVVLDD DTFKGVLKLG FRFTAADKLR  660
RKAWEQKIEG KNSEEAMNST TLTLMKVPLL RFLLYCFQKT TKYQLKDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rru_A	2e-12	23	212	48	227	Transcription factor MYC3
4ywc_A	2e-12	23	212	48	227	Transcription factor MYC3
4ywc_B	2e-12	23	212	48	227	Transcription factor MYC3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	67	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:8980509}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009134547.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493664	0.0	AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBank	AF251697	0.0	AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009134547.1	0.0	PREDICTED: transcription factor MYC1-like isoform X1
Swissprot	Q8W2F1	0.0	BH012_ARATH; Transcription factor MYC1
TrEMBL	A0A3P5ZT89	0.0	A0A3P5ZT89_BRACM; Uncharacterized protein
STRING	Bra000970.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11770	18	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00480.1	0.0	bHLH family protein