PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 309aa MW: 32774 Da PI: 6.5171

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009134422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.6e-09	155	199	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L XP_009134422.1 155 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 199 99*********************55......9************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-14	148	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.802	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-14	152	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	155	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-10	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0031347	Biological Process	regulation of defense response
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MASNNNPHEN LSDQTPSDDF FDQILGLPNF SASSSDGGLG GGGGGGAPPM MLQLGSGEEG 60 SHMAGLVGGS GPSVFHNQMF PLGLSLDQGK GPVFLRPEGG GVHATVNRSS SSSSSMKGPV 120 FHGQPMQQPA PAAPHQPTSI RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPTV 180 NKTDRAAMID EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTDMPLSSSV EDETSDGGRT 240 PQPAWEKWSN DGTERQVAKL MEENVGAAMQ LLQSKALCMM PISLAMAIYH SQPPDTSSVV 300 KPETNPPPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	164	RLRRER

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009134422.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352765	0.0	AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009134422.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-169	UNE12_ARATH; Transcription factor UNE12
TrEMBL	M4C9J3	0.0	M4C9J3_BRARP; Uncharacterized protein
STRING	Bra000872.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-152	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]