PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009133741.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 311aa MW: 33174.9 Da PI: 10.2854

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.7	3.5e-37	61	159	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ +++ + + ++++a +++ XP_009133741.1 61 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTT--TNADADVAEN 153 57999***********************************************************8888854421222222222..2222222222 PP TCP 96 kskksq 101 + kk++ XP_009133741.1 154 PAKKRR 159 111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.0E-30	66	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.327	67	121	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MATIKKHEAE RLRAVDLNII ETSKPFEVAN TVSLELKAEP SLEVPSISMS LAPPSSSIGP 60 PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LENAEPAIIA 120 ATGTGTVPAI AMSVNGTLKI PTTTNADADV AENPAKKRRK RPSNSEYIDI NEPVSVSVSS 180 GLAPASTAAQ QTLPQGMIPM WAFPSNAVVP TVGAFFLVQN PSNQPQILAY PAAAAALPAT 240 YVAAVQQASS MARPPPTPQV VPNFTGSVMA PSSSSSIATK NMLRDFSLES YNKKELHQFM 300 TTTAAPRSSN H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	159	KKRRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133741.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189580	0.0	AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133741.1	0.0	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	1e-137	TCP9_ARATH; Transcription factor TCP9
TrEMBL	M4C867	0.0	M4C867_BRARP; Uncharacterized protein
STRING	Bra000395.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-128	TCP family protein