 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009133683.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
Trihelix |
| Protein Properties |
Length: 356aa MW: 39300.6 Da PI: 9.661 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009133683.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 68.6 | 1.2e-21 | 52 | 143 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87
+W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ +++++qC++k+e+l+kry+ + +++++ ++ +s++++++++ea
XP_009133683.1 52 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRMEA 143
7*************************************88544444599*************************977999**********85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MSDPDSPLEQ VPLPVRNKSP PPQPDDSVTD LTIASTPAAV ATKNSRRLPP PCWSLEETIA 60
LIDGYRDKWH ALNRGNLKAN HWEEVAEAVA GNCPGVTPKK TAVQCRHKME KLRKRYRTEI 120
QRARSVPVAR FVSSWVHYKR MEAMEDRPES KPGGGDEERD ELYGGGGSVG RSTPRFFNRN 180
GTAGGSSSSG GIRIRIPTGV SIAQPGPRFP GKIDPKYTAS ASSRLGRGVG GGTSYGARGV 240
RIQEGGGGGE ERAGKRGREM MMMMTTEEGE EEEESDDPMV EIASAIKLLG DTLLRTEEKK 300
MEMTREIEAM RMEMEMKRTK MILESQQRIV EAFAKSMSEN LEEKKKKARR VSSLPP
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189399 | 0.0 | AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence. |
