PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 306aa MW: 34985.7 Da PI: 6.1887

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	180	223	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR+RK+++i eLe+ + +L++e + L + XP_009133535.1 180 KRVKRILANRQSAQRSRARKLQYISELERSITSLQSEVSVLSPR 223 8999********************************98777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.9E-13	176	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.611	178	230	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.0E-13	180	231	No hit	No description
Pfam	PF00170	1.9E-8	180	223	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.3E-11	180	234	No hit	No description
CDD	cd14703	3.67E-22	181	231	No hit	No description
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSQ KLSHFPTVAA SSAVQNPSWV DEFLDFSACR RGNHRRSISD 60 SIAFLEAPIV TSNMEEHNFD KFDDEQFMSM FTEDDDDLRN NPSHNNKNVG PSGCSLNTST 120 QADHKSFNDD EEPPSDHYMK DTNNNRNDEV RSQCKTEPED GTASSNNSGD SSSNRIIDPK 180 RVKRILANRQ SAQRSRARKL QYISELERSI TSLQSEVSVL SPRVAFLDHQ RLLLNVDNSA 240 LKQRIAALAQ DKIFKDTHQE SLKREIERLR QVYQQQSFKK MENANHLPET GVDIKLSIEK 300 EQMLNI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269\|PubMed:19449183}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133535.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241104	0.0	AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133535.1	0.0	PREDICTED: basic leucine zipper 34-like
Swissprot	F4IN23	1e-151	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A3N6R2D1	0.0	A0A3N6R2D1_BRACR; Uncharacterized protein
STRING	Bra000256.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-136	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]