![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009133521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 28361.6 Da PI: 9.4285 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H + H XP_009133521.1 91 FECHYCFRKFPTSQALGGHKNAH 113 89**************9998877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.58E-5 | 88 | 119 | No hit | No description |
Pfam | PF13912 | 1.1E-6 | 90 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.699 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MEETNGRRET HDFMNVNVES FSQLPFIRRT PPKDHKGSKI RLFGQELLKD NPQHEDFSPD 60 SCETITTRIK DEGSSENVKE KEKDKSKNRR FECHYCFRKF PTSQALGGHK NAHKRERQHA 120 KRGSMTSYLN QHPEPHYVYG FLNNHHYPSW TTEARFYGGG GGVQQTPSYY SGTLLPPPSS 180 SIPPTINGSP LGFWRVPPST STNAIHGVYS ASPALAFRAH DQESREPTWP YKLMKPNVKD 240 HVSLDLHL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.28975 | 1e-165 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing cauline leaves. {ECO:0000269|PubMed:17507408}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Is not involved in the regulation of trichome branching. Is functionally equivalent to GIS2 (PubMed:17507408). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:17507408, ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009133521.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin. {ECO:0000269|PubMed:17507408}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC241104 | 0.0 | AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133521.1 | 0.0 | PREDICTED: zinc finger protein 8-like | ||||
Swissprot | P93751 | 1e-114 | ZFP8_ARATH; Zinc finger protein 8 | ||||
TrEMBL | M4C7R7 | 0.0 | M4C7R7_BRARP; Uncharacterized protein | ||||
STRING | Bra000245.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2495 | 19 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41940.1 | 1e-99 | zinc finger protein 8 |
Publications ? help Back to Top | |||
---|---|---|---|
|