PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133509.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 424aa    MW: 46596 Da    PI: 9.1917
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1765124155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_009133509.1  65 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 124
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1765133IPR016177DNA-binding domain
PfamPF008476.4E-1365124IPR001471AP2/ERF domain
SMARTSM003803.8E-2666138IPR001471AP2/ERF domain
PROSITE profilePS5103220.12666132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1566133IPR001471AP2/ERF domain
PRINTSPR003674.2E-56778IPR001471AP2/ERF domain
PRINTSPR003674.2E-5114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASMSSPDQG PKTEAGGGGE SSENVSASDQ MLMYRSFKKA KKERGCTAKE RISKMPPCTA  60
GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQV YLGAYDDEEA AARAYDLAAL  120
KYWGPGTLIN FPVTDYSRDL EEMQNLSREE YLATLRRKSS GFSRGIAKYR GLQSRWEASA  180
SRMPGPEYFS NLHYGAGDER GAEGDFLGSF CLERKIDLTG YIKWWGVNKS RQPESSSKAS  240
EDAKVEDAGT ELKALEHTSQ ATEPYKAPNL GVLQRKGKQI TSPSSTSSAL SILSASPAYK  300
SMEEKVMKIQ ESSSTRENDE NANRNITSIE KSHGKEIEKP AVSHGVALGS GGGVAPAAAL  360
SLQKSMYPLS SLLTAPLLSN YNALDPLGDR ILWTPFLPPG SSHTSEVTKT ETSCSTYSYL  420
PQEK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535340.0AK353534.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133509.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
RefseqXP_013724307.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A397ZWZ60.0A0A397ZWZ6_BRACM; Uncharacterized protein
STRINGBra000237.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein