PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133444.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 334aa    MW: 37382.1 Da    PI: 6.3964
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.3e-10140187552
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                     kr++r ++NR +A rs +RK  +i +Le++v++L+ae  +    l+ +
  XP_009133444.1 140 KRAKRIMSNRQSAARSKERKTRYIMQLEKRVQALQAEYATRSAYLSLI 187
                     9***********************************976655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-13136200IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.232138201IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-8139212No hitNo description
PfamPF001708.0E-10140198IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-8140188No hitNo description
CDDcd147031.20E-17141186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDHDPSNAKP NQHPPLTNPS PTSFRGPNHR RAHSEDQFRL PEDLDFSETF SGFYDLGSED  60
DLFCSYMDVE NLGSGLGPGN DNPFPAENGG GGGREEEGGR ERPRHRHSVS VDGSSSLESI  120
EARKAMTPEQ LAELWVVDPK RAKRIMSNRQ SAARSKERKT RYIMQLEKRV QALQAEYATR  180
SAYLSLINGD IDGLLSENTK LKLQIQMVEQ KAKLHDALND KMKRESEMMR FAAAGQVSHS  240
DAYNLQMARM QYSQQQAFFQ QQADAQNMQQ MTPQFHHFQP NNNQNPPLMH HATSNASGQS  300
HSYAEEDHLG SLQGLDIGNG SNFGRSSESS SSTK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133444.10.0PREDICTED: transcription factor RF2b-like
SwissprotO228731e-143BZP18_ARATH; bZIP transcription factor 18
TrEMBLM4C7L70.0M4C7L7_BRARP; Uncharacterized protein
STRINGBra000195.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2331234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-107bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]