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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009133422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 25843.2 Da PI: 8.2026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5.1e-13 | 60 | 106 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h +E+rRRdriNs ++ Lr+l+P + Kl+Ka+ L ++e +k+L XP_009133422.1 60 RSHRLAEKRRRDRINSHLSALRKLVPDS-----DKLDKAALLASVIEQVKEL 106 68*************************8.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.186 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-13 | 60 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-12 | 60 | 109 | No hit | No description |
Pfam | PF00010 | 1.0E-10 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-14 | 60 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-12 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MENSYDSAAA AKWSDSTSPY NMVSWSLLQP GSSDSDLSRF NLGSSDELVG GNDKAESVSR 60 SHRLAEKRRR DRINSHLSAL RKLVPDSDKL DKAALLASVI EQVKELKQEA KESPIFQDLP 120 TEADEVTILP ETNSNTTIFK ASFCCPDQTE AISEIVSVLT KFKLETIQGE IICVGGRMRI 180 NFILKETATT TSVKALKQSL CAALNRITSL TTSSVCRIRS KRQRWFLSSN YSQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009133422.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133422.1 | 1e-171 | PREDICTED: transcription factor bHLH51-like | ||||
Swissprot | Q9XEF0 | 1e-116 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | A0A078EZU5 | 1e-170 | A0A078EZU5_BRANA; BnaA03g18960D protein | ||||
TrEMBL | M4C7J9 | 1e-170 | M4C7J9_BRARP; Uncharacterized protein | ||||
STRING | Bra000177.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6806 | 25 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 1e-119 | bHLH family protein |
Publications ? help Back to Top | |||
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