PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133413.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 555aa    MW: 61928 Da    PI: 7.8648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133413.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-07259279526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C  f++ G C+ Gd+C +aHg
  XP_009133413.1 259 PCLEFRK-GSCPKGDSCEYAHG 279
                     8999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.42E-1254156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-1378177IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.96578149IPR020683Ankyrin repeat-containing domain
SMARTSM002488.3E-478108IPR002110Ankyrin repeat
PfamPF136372.2E-879132No hitNo description
CDDcd002042.72E-1280177No hitNo description
SMARTSM0024852114146IPR002110Ankyrin repeat
SMARTSM003566.9E-5254280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206254281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5259280IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-5259279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4286318IPR000571Zinc finger, CCCH-type
SMARTSM0035667289312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MCGSERNLCS SRTILTEDEL MRAKAEQERV DATMCLLELA ACDDLPSFKR QTEESSLDIN  60
EPGLWYCKRV GSKKMGFQER TPLMVAAMYG SIEVLTYIIS TGRSDVNRVS SDEEKVTALH  120
CAVSGCSVSI VQVIKILLDA SASPNFLDAN QNKPVDLLVQ ASRFIPNQTR KAVELLLTGV  180
ISSEEEEVMK SVVSKYPADA TLPDINEGVY GTDEFRMFSF KVKPCSRAYS HDWTECPFVH  240
PGENARRRDP RKFPYSCVPC LEFRKGSCPK GDSCEYAHGV FESWLHPAQY KTRLCKDETC  300
CARKVCFFAH RRDELRAVNA STGSAMVSPP MSPSSPSVTL SPRHGGLWQN RVNGLTPPPL  360
QINGSRLKSR LSTRDVDMEM ELRLRRGAYD SPSSVMQLQS PSRSHYPSSP NRQPPPHGFE  420
SSAAMAAAVM NARSSAFARR SLSFKPAPVA TSNVVSEWGS PNGKLEWGMQ REEMNKMRRS  480
ASVGIHGNNN NSYNNVSVSV RDYSDEPDVS WVNSLVKESE PERAFGLNER VGNTFKVRSW  540
AEQMYIDHEK QQIVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.167801e-165root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133413.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133413.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_018512667.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0D3B6000.0A0A0D3B600_BRAOL; Uncharacterized protein
TrEMBLA0A3N6R8580.0A0A3N6R858_BRACR; Uncharacterized protein
TrEMBLA0A3P6AJK60.0A0A3P6AJK6_BRAOL; Uncharacterized protein
STRINGBo3g034750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein