PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133354.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 743aa    MW: 86009.7 Da    PI: 6.2001
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.28.6e-2632132190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                     +fY+ YAk +GF++ +++s++s+++g++++++fvC+++g++++++ +           ++ +r++ ++++t+Cka+l+vkk++dg+w++  l++e
  XP_009133354.1  32 EFYKGYAKFIGFNTIIKASRRSRMSGKFIDAKFVCTRYGTKKTDEAEeeedinipqarKRGRRTNLSSSKTDCKACLHVKKRQDGRWVIRALVKE 126
                     6****************************************999988999****999555566677899************************** PP

            FAR1  85 HnHela 90 
                     HnHe +
  XP_009133354.1 127 HNHETF 132
                     ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2332132IPR004330FAR1 DNA binding domain
PfamPF105517.3E-21209300IPR018289MULE transposase domain
PROSITE profilePS5096610.076481517IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6492519IPR006564Zinc finger, PMZ-type
PfamPF044349.3E-6493515IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MEIDLEMSSG ECDDDQRINE GLEFESKEEA FEFYKGYAKF IGFNTIIKAS RRSRMSGKFI  60
DAKFVCTRYG TKKTDEAEEE EDINIPQARK RGRRTNLSSS KTDCKACLHV KKRQDGRWVI  120
RALVKEHNHE TFPSGQTTSI RESCGRGKEM KSSRKFQALE GGDVERLLSF FTDMQAENPF  180
FFYAVDQTLR SVFWVDAKGR LDYACFSDVV SIDTTFVKNE YKLPLVAFIG VNHHGQWLLL  240
GCGLLLDDES TKSGFVWLFK SWLKAMNGRQ PRVILTKHDQ TLKEAVSEAL PASRHCFNMY  300
DTLGQMSEKV GQGFVDEINE AIYGSCKGDE FEERWCEVVD RFGVRDNDWL RSLYEDREHW  360
VPVYMQDVSL AGMCSADSVL DKYIQRKTTL RAFLDQYKRM VQERVEEEEK AEIETLCKQP  420
GLKSPSPFGK QMAELYTREM FKRFQVEVLG GVACHPKIES DEGNNKKMTF RVQDYEQNRA  480
FVVVWSSESS EVVCSCRLFE FKGFLCRHAM IVLQMSGELS VPSRYVLKRW RKDARRREAV  540
ESDLMCGDLT KAQRYKDLCL RSLKLSEEAS LSEESYNAVM NVLNEAFRKC EITSNVIHIV  600
EESDSDVAHE EHNNNNSFNE NVADTGQEHS LHEAWKETAL QEQRHRYSIL DDYLSAQQMS  660
HEMGQISMMA SNRNGYSTSH QNIHSLGQSI TQQRLYETDQ LSFRPDQVMY ERLQDMGQTS  720
FRHHPQQHCE SSKHQQSNKN VSL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133354.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1
RefseqXP_009133362.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLA0A398AKH20.0A0A398AKH2_BRACM; Uncharacterized protein
STRINGBo1g022120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1