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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009133306.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
bZIP |
| Protein Properties |
Length: 366aa MW: 39537.6 Da PI: 4.6968 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009133306.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 46.7 | 7e-15 | 212 | 264 | 4 | 56 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
+kr+rr+ +NRe+ArrsR+RK++++ L v +L +e ++ k+l+e +++
XP_009133306.1 212 VKRARRMLSNRESARRSRRRKQEQMSGLDSQVGQLRGEHATMLKRLSEVTQKF 264
79********************************************9998876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MKSGFSADDP TDSFWPPPPP PSPPLSSGDG MTRSQSEWAF QILLEEISSV PAGSSISSSS 60
ATDNTIGRSY PPQARTEEAS SNVVEMQKPS RNGATSSFVE ELDPNHYQAV LKSKLELACA 120
AVALRVSTVV PEDSSASSGN LNQVSPVGSQ TQGSAVAQMS PAVSSVSDAP SFDTQRQRDI 180
QSRLAASDSD DSDDEDPDGE TVTTVNADPT NVKRARRMLS NRESARRSRR RKQEQMSGLD 240
SQVGQLRGEH ATMLKRLSEV TQKFSTAVVD NRILKADIET LRTKVKMAED TVKRVTGMNP 300
RLLAKPYSIP FDRTLMGSSQ PNLNQTDMIP NQISENDSFA SNSVVSLEAS CNAFEATSWI 360
CDKDAP
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 225 | 232 | RRSRRRKQ |
| 2 | 227 | 232 | SRRRKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Jain P, et al.
A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
Sci Rep, 2017. 7(1): p. 14343
[PMID:29084982] - Pedrotti L, et al.
Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
Plant Cell, 2018. 30(2): p. 495-509
[PMID:29348240]
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