PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133022.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 394aa    MW: 42440.9 Da    PI: 6.416
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_160.24.3e-19288350163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq NReAA+rsR+RK+ae ++L++  ++L+aeN +L+ e+++lk + ++l+se+
  XP_009133022.1 288 ERELKRQRRKQTNREAAQRSRLRKEAEFDQLAQYTEVLSAENASLRAEMNRLKSQREELTSEN 350
                     89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.6E-271100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.8E-28137255No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-15281347No hitNo description
SMARTSM003388.7E-16288352IPR004827Basic-leucine zipper domain
PfamPF001701.0E-16288350IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587290353IPR004827Basic-leucine zipper domain
CDDcd146913.97E-16290346No hitNo description
SuperFamilySSF579591.38E-9291347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASSEMEKPS KEKELKQPSS SSSAPPPSQE PSSSVSAGPD WSGFQASPAP MQPHGFVTSS  60
PQPHPYMWGV QHMMPPYGTP PHPYVTMYPP GGMYAHPSMP PGSYPYSPMP SPNGVTEASG  120
NTTGGTEGDS KRSDVKEKLP IRRSKRILSM MKGKNNEPGK NSGASANVAY SKSGESDSDG  180
SSEGSDANYQ IDLGSSQDGK DASENGGSAN GLQNGSVGTP LPTVSQKVPI MSKTAPGVPG  240
QPTNINIGMG YWGAPIPGMH GKVSTPVPGV FAQMSRDGGH SQPWLQDERE LKRQRRKQTN  300
REAAQRSRLR KEAEFDQLAQ YTEVLSAENA SLRAEMNRLK SQREELTSEN TSLKDLLLSF  360
PPLEGINMDK DDQEPDTNQT CFTETKFVSY KDST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133022.10.0PREDICTED: bZIP transcription factor 16-like isoform X2
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLM4E2L10.0M4E2L1_BRARP; Uncharacterized protein
STRINGBra023012.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-172basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]