PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133004.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 255aa    MW: 29413.5 Da    PI: 4.7277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.61.9e-07130175555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  XP_009133004.1 130 QSMAARERRRRIAEKTHELTKLVPGG-----QKLNTAEMFQAAAKYVKFLQ 175
                     567889******************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-11123185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.824125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-10128185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-5130175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-8131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-4147178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSSMDCLSNF FTWDPPIQLQ DCFIPDMDMI IPETDSFFFQ SQPQMQFHQP FVQEEAPSQT  60
FIELTDFDSF SDQFLPPQET HLPYPKAETF DEIHYLDSFL PTPKRQKLVN SSYHCLGDQD  120
GAKKPKLSSQ SMAARERRRR IAEKTHELTK LVPGGQKLNT AEMFQAAAKY VKFLQSQVGI  180
LQMMQTTKKT QGITDVEIET QFLLESQAVQ EKLSMKELCL VPCEIVRDLT SEESIWRNPK  240
ISREIDKLLS TDLAN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896550.0AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740501.21e-170transcription factor bHLH53-like
SwissprotQ84RD01e-119BH053_ARATH; Transcription factor bHLH53
TrEMBLM4E2J21e-170M4E2J2_BRARP; Uncharacterized protein
STRINGBra022993.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]