PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132812.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 133aa    MW: 14942.1 Da    PI: 7.3437
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.0001229691055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + R d++ ++ + L++l+ +      +K + a++L ++++YI+ Lq
  XP_009132812.1 29 KERKDKVGERVSALQQLVSPY-----GKTDTASVLLETMQYIQFLQ 69
                    567788888999999999998.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-91886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5981968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-122486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-52973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MMMENKRCVC SFEESSMKRH KSDSSFSSKE RKDKVGERVS ALQQLVSPYG KTDTASVLLE  60
TMQYIQFLQE QVKVLSAPYL QTSPTITQEE MVDHSLRSRG LCLVPMEYTL GVAQSNGADI  120
WAPVKTPTSP AFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132812.15e-96PREDICTED: transcription factor bHLH113-like
RefseqXP_009132813.15e-96PREDICTED: transcription factor bHLH113-like
SwissprotQ7XJU21e-77BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A397ZWK51e-94A0A397ZWK5_BRACM; Uncharacterized protein
STRINGBo3g026410.11e-88(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.55e-80bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]