PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009132745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 338aa MW: 38058.1 Da PI: 10.3591 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.7e-31 | 272 | 330 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eHnh+k XP_009132745.1 272 DDYSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 330 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.6E-17 | 221 | 268 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-33 | 258 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.481 | 265 | 331 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.12E-26 | 268 | 330 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 270 | 330 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 272 | 329 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEEIEGTNRA AVESCHRVLN LLSSRPHQQD HLYDMSLLSE TREAVFRFKR VANLLSSSSV 60 GHARFRRAKR PQTHLSQTIF LDPCLQRTEL TSSQKPPVVL RSDLSLGPVD SLTLGTRSFG 120 LNSNAKAPLL QLNQQQQQQL HERLQAHQQH QQRHQAEMML RKCNSGMSLS FDNSSCTTPT 180 MSSTRSFISS LSIDGSVNNS SSSFHLLGAP SSTDQSSQYS KRKCLMRGAD EHGSAKCGRS 240 SRCHCSKKRK HRVRRSIRVP AISNKVADIP PDDYSWRKYG QKPIKGSPYP RGYYKCSSIR 300 GCPARKHVER CLEDPAMLIV TYEAEHNHPK MPSQTVTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 258 | 333 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.7086 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009132745.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430039 | 0.0 | KF430039.1 Brassica rapa WRKY transcription factor 21 (WRKY21) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018513624.1 | 0.0 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-167 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | M4E208 | 0.0 | M4E208_BRARP; Uncharacterized protein | ||||
STRING | Bra022808.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3567 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 2e-94 | WRKY DNA-binding protein 21 |