PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 342aa MW: 37435.4 Da PI: 8.1687

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009132698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.3	3.4e-41	104	181	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++d+s+++eyh+rhkvC+vhsk+pvv+++g +qrfCqqCsrfh l+efDe+k+sCr+rL++hn+rrrk+q+ XP_009132698.1 104 ICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGNNQRFCQQCSRFHGLEEFDEGKKSCRKRLDGHNRRRRKPQP 181 5**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.6E-32	97	166	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.505	102	179	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-38	103	184	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-30	105	178	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGGSSSPPR RLQPKGDLPF DLKLGRNIGH 60 SSSSSSSSAF GKTEKVISLS KLKESASEAS RSSKRTRGNN QIPICLVDGC DSDFSNCREY 120 HKRHKVCDVH SKTPVVTING NNQRFCQQCS RFHGLEEFDE GKKSCRKRLD GHNRRRRKPQ 180 PDHTDRTATF FQGSKLLDFS SSPHVFPTTS VVSPSWGSGP VSVAMANGSS YGQNQSYVGS 240 FPAKTGITFP ISSSPNSRGK QFPFLQEEED SSRMTSCIHD SDCALSLLSS SSSHLLQPQP 300 PLSLSQETVF YGSGLFENAS AVSDGSGNEA VPLPQTFPPF HW

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDWNFKLSSG YFSEFDQESV PDLTPVDASI SFGGSSSPPR RLQPKGDLPF DLKLGRNIGH  60
SSSSSSSSAF GKTEKVISLS KLKESASEAS RSSKRTRGNN QIPICLVDGC DSDFSNCREY  120
HKRHKVCDVH SKTPVVTING NNQRFCQQCS RFHGLEEFDE GKKSCRKRLD GHNRRRRKPQ  180
PDHTDRTATF FQGSKLLDFS SSPHVFPTTS VVSPSWGSGP VSVAMANGSS YGQNQSYVGS  240
FPAKTGITFP ISSSPNSRGK QFPFLQEEED SSRMTSCIHD SDCALSLLSS SSSHLLQPQP  300
PLSLSQETVF YGSGLFENAS AVSDGSGNEA VPLPQTFPPF HW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	98	178	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	178	KKSCRKRLDGHNRRRRKP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269\|PubMed:14573523}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00555	DAP	Transfer from AT5G50570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009132698.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132698.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_009132699.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Refseq	XP_009132700.1	0.0	PREDICTED: squamosa promoter-binding-like protein 13A
Swissprot	B9DI20	1e-163	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	1e-163	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	M4E1W6	0.0	M4E1W6_BRARP; Uncharacterized protein
STRING	Bra022766.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4111	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-141	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]