PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009132684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 35515.9 Da PI: 9.4789 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.8 | 2.3e-09 | 183 | 230 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq XP_009132684.1 183 SHSLAERARREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 230 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-17 | 177 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.63E-10 | 177 | 234 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-17 | 179 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.707 | 179 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-7 | 183 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-10 | 185 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MSLLVLPTNK KTHSHKDKKS EASILQMASF SYFQHYPHSL LDPLLFSSPN SSTKLSGFID 60 QNPLYPPPNI STIVDTSLNP FLDSFNVEKT ESSDVKKQIN TNATAALTGD QLSPGPSTTS 120 AGKKQRRKTR NGSKSKEGVE GRKSKKPRNG SISTDVKVKR ASEQEPPKDY IHVRARRGQA 180 TDSHSLAERA RREKISERMR TLQNLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL 240 ASISPVVYDF GSDLDGIIVR PEMGSADVGT SFANAMPTTT TNFSSLLDDS ILPAEAHLQE 300 DGGEREKTVD RSGFNNNSFC SFS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009132684.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009132684.1 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
Swissprot | Q93W88 | 1e-143 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | M4E1V3 | 0.0 | M4E1V3_BRARP; Uncharacterized protein | ||||
STRING | Bra022753.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8796 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-137 | bHLH family protein |
Publications ? help Back to Top | |||
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