PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 323aa    MW: 35515.9 Da    PI: 9.4789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09183230455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L+ l+P +    +k   Ka +L + ++Y++sLq
  XP_009132684.1 183 SHSLAERARREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 230
                     8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17177244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-10177234No hitNo description
Gene3DG3DSA:4.10.280.105.6E-17179241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-7183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSLLVLPTNK KTHSHKDKKS EASILQMASF SYFQHYPHSL LDPLLFSSPN SSTKLSGFID  60
QNPLYPPPNI STIVDTSLNP FLDSFNVEKT ESSDVKKQIN TNATAALTGD QLSPGPSTTS  120
AGKKQRRKTR NGSKSKEGVE GRKSKKPRNG SISTDVKVKR ASEQEPPKDY IHVRARRGQA  180
TDSHSLAERA RREKISERMR TLQNLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL  240
ASISPVVYDF GSDLDGIIVR PEMGSADVGT SFANAMPTTT TNFSSLLDDS ILPAEAHLQE  300
DGGEREKTVD RSGFNNNSFC SFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132684.10.0PREDICTED: transcription factor bHLH137
SwissprotQ93W881e-143BH137_ARATH; Transcription factor bHLH137
TrEMBLM4E1V30.0M4E1V3_BRARP; Uncharacterized protein
STRINGBra022753.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-137bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]