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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009132582.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 209aa MW: 23895.7 Da PI: 9.7822 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009132582.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.6 | 1.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien++ rqvtfskRr g++KKA+ELSvLCda+va iifs++g+ly+++s
XP_009132582.1 9 KKIENTTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIIFSQKGRLYDFAS 59
68***********************************************86 PP
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2 | K-box | 60.1 | 9.1e-21 | 84 | 171 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+e+ + l++e+ + ++ie+L+ + +l+G++L +slkeLq++ +q+eksl +Rs+K +l+ +++e+l+ k +el++e +L+ +
XP_009132582.1 84 TEQYVQGLKKEMVTMVEKIEMLEVHNQKLMGKSLAFCSLKELQEIATQIEKSLHIVRSRKAKLYEDEVEKLKAKGRELKDERVRLSGR 171
6788899****************999*******************************************************9998765 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MVRGKIQIKK IENTTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS 60 DIQKTIKRYA EYKGEYFVAE SHPTEQYVQG LKKEMVTMVE KIEMLEVHNQ KLMGKSLAFC 120 SLKELQEIAT QIEKSLHIVR SRKAKLYEDE VEKLKAKGRE LKDERVRLSG RVGEEPSGMP 180 MPSGSKEKED VETDLSIGFR PDLNILLVP
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |