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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009132580.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 221aa MW: 25718 Da PI: 10.1028 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009132580.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90.8 | 6.6e-29 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien + rq+tfskRrng++KKA+ELSvLCda+va i+fs++g+lye+ss
XP_009132580.1 11 KKIENRTSRQITFSKRRNGLFKKAHELSVLCDAQVAAIVFSQSGRLYEFSS 61
68***********************************************96 PP
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2 | K-box | 59.6 | 1.3e-20 | 92 | 173 | 16 | 97 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+l++e++ + k+i+ L+ qR+l+G++L+s+sl +Lq Le+q+eksl+ iRs+K el+ +q+ +l++ke+el ++ ++Lr++
XP_009132580.1 92 ELKKEMDIMVKKIDLLEVHQRKLMGQGLGSCSLAQLQGLETQIEKSLRIIRSRKAELYADQLLKLKEKERELLDQRRRLREE 173
5789***************************************************************************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MKMVRGKIEI KKIENRTSRQ ITFSKRRNGL FKKAHELSVL CDAQVAAIVF SQSGRLYEFS 60 SSEMEKTIER YVKFSPDYFV PGRPQVELYL LELKKEMDIM VKKIDLLEVH QRKLMGQGLG 120 SCSLAQLQGL ETQIEKSLRI IRSRKAELYA DQLLKLKEKE RELLDQRRRL REEEIRETLV 180 RPMLPVTLHT GKDETGSACR MSKHSSEVET DLFIGFPATR L
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |