PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132570.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 388aa    MW: 44699.4 Da    PI: 6.6875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013149172123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y+C+ Cg+ ++++ +Lk+H +  H
  XP_009132570.1 149 YVCGVCGRKCRTNLDLKKHFKQlH 172
                     9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.741149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
CDDcd061671.63E-9163303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSLFCNSIDT LYPKPYLPHK SHFFPLSDTK LRNLSFAGFP HLRIKSCLKS ASSSEIDMVR  60
NKEGVFAPKE KKVVVLWDLD NKPPRGPPFE AATELRRVAE HLGRVVEISA YANRHAFIHL  120
PHWVVEERRS RRSLDFAERK GEVVPEEPYV CGVCGRKCRT NLDLKKHFKQ LHERERQKKV  180
NRMRSLKGKK RQKFKERYVS GNEKYNEAAR RLLTPKVGYG LEAELRRAGV YVKTVEDKPQ  240
AADWAVKRQI QHSMTRGIAW LVLVSDDKDF SDMLRKAREA DLGTVVVSDR DGVLGRQADL  300
WVPWMGVENG EIGEKDLVPE KRRRFDEEGE EEEEGDGLFS LAYDEDEREE MRVESDGFGR  360
FSVSAFSEDE GDFALSDSDD DSDDELSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324EKRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132570.10.0PREDICTED: uncharacterized protein LOC103857156
TrEMBLM4EK310.0M4EK31_BRARP; Uncharacterized protein
STRINGBra029148.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein