PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132371.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 477aa    MW: 52838.5 Da    PI: 8.0662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31181238260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ +++++ei+Y+g+H+h+k
  XP_009132371.1 181 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKVFERSH-EGQITEIVYKGTHDHPK 238
                     8***************************************9.***************85 PP
2WRKY1061.9e-33339397159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009132371.1 339 LDDGYKWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 397
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.307175239IPR003657WRKY domain
SuperFamilySSF1182906.8E-25177239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-27177239IPR003657WRKY domain
SMARTSM007745.5E-33180238IPR003657WRKY domain
PfamPF031064.6E-24181237IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37324399IPR003657WRKY domain
SuperFamilySSF1182902.48E-29331399IPR003657WRKY domain
PROSITE profilePS5081138.434334399IPR003657WRKY domain
SMARTSM007742.5E-38339398IPR003657WRKY domain
PfamPF031066.8E-26340397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDPDVSNRVD CSESRRDSSG GGARYKLMSP AKLPISRSTC ITTIPPGLSP TSFLESPVLL  60
SNIKAEPSPT TGSLFKPHAV HANSSSYTAR TIRHNILDEK NSNESFEFRP PPASTMFYAE  120
LVDKQRSEAH SFKHSPSSAT EAASSSEISP QNALPHQTTP PGSERSDQDE SRGSAPSTLA  180
DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKVFERS HEGQITEIVY KGTHDHPKPQ  240
PSRRNSGGLV MPAQEERLDK CSSLNGRDGN YTYNLSPPVE PNGNDDGGDL ANRNNDDVED  300
NDPFSKRRKV DGAMEVTALV KPIREPRVVV QTLSEVDILD DGYKWRKYGQ KVVRGNPNPR  360
SYYKCTATGC PVRKHVERAS HDPKAVITTY EGKHNHDVPM VRSNNSHHEL LAPRFRPEET  420
TSTVSLHLGV GIASGCPDHT SNEHPHQQKP AGFMFVHGPS MGSYYANSLN VRLNNQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36179399877Probable WRKY transcription factor 4
2lex_A3e-36179399877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895420.0AC189542.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132371.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM4EJK50.0M4EJK5_BRARP; Uncharacterized protein
STRINGBra028971.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein