PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009132329.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 389aa    MW: 42373.4 Da    PI: 5.3024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009132329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001103123323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F+++  L  H+r H
  XP_009132329.1 103 CSVCHKKFTSRKALYGHMRFH 123
                     *******************98 PP
2zf-C2H211.30.0011251273123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksF++   L  H  +H
  XP_009132329.1 251 HVCVTCNKSFTSYQALGGHRASH 273
                     79**********99999998887 PP
3zf-C2H214.69.5e-05320342123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+ksF++   L  H r+H
  XP_009132329.1 320 HVCDICHKSFPTGQALGGHKRRH 342
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-66388IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.21E-964123No hitNo description
PfamPF139129.1E-96688IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.9266693IPR007087Zinc finger, C2H2
SMARTSM003550.16688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014101123IPR007087Zinc finger, C2H2
SMARTSM003550.023101123IPR015880Zinc finger, C2H2-like
PfamPF139120.0015103123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-7250273No hitNo description
PfamPF139123.3E-10251275IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452251278IPR007087Zinc finger, C2H2
SMARTSM003550.37251273IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253273IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-7315342No hitNo description
PfamPF139123.8E-13320343IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12320342IPR007087Zinc finger, C2H2
SMARTSM003550.043320342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280322342IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEQCYKDDCG SSLGFIVEKR KDIEKDQAED DEKEPKSISL REEDNDDRAN SIDLEGDVEE  60
EEEKKHMCSE CGKQFMSGKA LGGHKRIHVL ENQNKSGESE IDCSVCHKKF TSRKALYGHM  120
RFHPHRTWKG VLPPPPPPHP LGNSSSSTLS IDDHHVGEFT SSDHDDDDDD DDGYDNIDAK  180
DLMLLATTAE AVNLDVAETS DSHSAEDMKK KKRRLSEIEK VSSSSSTHDH HHQLGDVAAA  240
AEEGGGAREK HVCVTCNKSF TSYQALGGHR ASHNKVKVLE SHQARANSEA LLLGTEAMIT  300
GLASAQASNT SLSSGNNGDH VCDICHKSFP TGQALGGHKR RHWTGPVSSE AVTAAPTAPA  360
AASSSQVTET VQEVKKFEFD LNELPPNEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213KKKKRR
2209213KKKRR
3209214KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009132329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132329.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLM4EJH70.0M4EJH7_BRARP; Uncharacterized protein
STRINGBra028943.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-62C2H2 family protein