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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009131648.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 336aa MW: 37943.9 Da PI: 6.5131 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009131648.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 178.4 | 1.9e-55 | 21 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdee+++ yLk+kv ++++++ ++ e+d++k+ePwdLpk++k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++
XP_009131648.1 21 LPPGFRFHPTDEEIISSYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPKRAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKG 114
79*************************999.67***************99999*****************************************9 PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
kg lvg+kktLvfy+grap+gekt+Wvmheyrle
XP_009131648.1 115 KGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 148
********************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MAVVVESGVV LNHGGDELVD LPPGFRFHPT DEEIISSYLK EKVLDSRFTA VAMGEADLNK 60 CEPWDLPKRA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPRGEKTNW VMHEYRLEGI YSYHNLPKTA RDDWVVCRVF HKNNPSTTTQ 180 QMTRIPMEDL ARTDSLENID HFLDFSSLPP LIDPSFTGQP NFKPINPPTY DISSPIQPHP 240 FNSSYQPIFN HQGFGSASGS GSGSTYNNNN KEMVKMEQSL VSVSQETCLS SDVNATTTAE 300 VSSGPVMKQE MSMMGMVNGS KSYEDLCDLR GILWDY
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-52 | 19 | 174 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-52 | 19 | 174 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 6e-52 | 19 | 174 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KP641357 | 0.0 | KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds. |