PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 191aa MW: 21662.4 Da PI: 10.3277

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.4	2.6e-16	35	82	4	55
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + Vr ++ +gr++AeIrdp++ ++r++lg+f+t eeAa+a++ +++++g XP_009131504.1 35 RVVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTGEEAARAYDTTAREFHG 82 679999.*******654...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.62E-25	32	89	No hit	No description
PROSITE profile	PS51032	20.6	33	90	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-26	33	96	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	34	45	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.2E-26	35	90	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-19	37	90	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-9	37	81	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-8	56	72	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVSTDYSLLS THNSTTSFQE RWQLPRYGLP SSSQRVVRKR PWGRYAAEIR DPVKKTRVWL 60 GTFDTGEEAA RAYDTTAREF HGFKAKTNFS LPGESPTSDG SIGRSEMTTR RIEMVGRFPF 120 AWHRQNNVSS GLPPNVAGFF FDPSRAAALR VELSQVYPVQ FDPVNIELSI GIPETVKVHF 180 LVSKHLNWAQ I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-15	28	89	9	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131504.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232554	0.0	AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131504.1	1e-140	PREDICTED: ethylene-responsive transcription factor 9-like isoform X1
Swissprot	Q9FE67	2e-63	ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBL	M4CQ36	1e-128	M4CQ36_BRARP; Uncharacterized protein
STRING	Bra006325.1-P	1e-129	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	8e-66	erf domain protein 9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]