PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131503.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 193aa    MW: 22169.3 Da    PI: 6.3028
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.7e-1375127557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++   +l++ ++  +
  XP_009131503.1  75 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILGKLNKATDSND 127
                     79*************************************99988888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.5E-1271135IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.00273121IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-1073124No hitNo description
PfamPF001703.1E-1175132IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.59E-1275124No hitNo description
CDDcd147021.15E-1876123No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MHPNYDSSSI NNMQQQDYFH LNPYYNNLNP STNNNLNLLS YPQIQEFNNL QSPASNNNST  60
TSDEATEETF VISERKQRRM VSNRESARRS RMRKQRHLDE LLSQVAWLRS ENHQILGKLN  120
KATDSNDLVL QENLILKEEN LELRQVITSM KKLGGAEGGS TSFHGIYCSS SLDHDLDQDF  180
SCITNDPKSH HPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325540.0AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131503.11e-142PREDICTED: basic leucine zipper 43-like
RefseqXP_013740176.11e-142basic leucine zipper 43
TrEMBLA0A397ZU971e-140A0A397ZU97_BRACM; Uncharacterized protein
STRINGBra006324.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.13e-74basic leucine-zipper 3