 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009131444.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 304aa MW: 34919.8 Da PI: 6.8017 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009131444.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.2 | 5.8e-18 | 115 | 167 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k
XP_009131444.1 115 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 167
4568889*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 131 | 4.7e-42 | 113 | 204 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekk+rl+ eqv++LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++dalk++n++L++++++L++e+
XP_009131444.1 113 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDALKSDNDSLQAHNKKLHAEVV 204
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MYMYEEEKSN IVNSQAGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG 60
GNYMMNRSMS FTGVSDHHHL TQKSPTTTNM NDQDQVGDED NLSDDGSHMM LGEKKKRLNL 120
EQVRALEKSF ELGNKLEPER KMQLAKALGL QPRQIAIWFQ NRRARWKTKQ LERDYDSLKK 180
QFDALKSDND SLQAHNKKLH AEVVALKKQD LKESGKIKRE SAEASWSNNE STENNNNSSE 240
GLKDLFPSTI RSVTTITTSA HIEHQMVQDQ GFCNMFNGID ETTSAGYWAW PDQQQQHHNH 300
HHFN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 161 | 169 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. |
| GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
