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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131125.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25793.5 Da PI: 8.6829 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.7e-13 | 59 | 104 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_009131125.1 59 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 104 799***********************6.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.282 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-19 | 58 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.07E-13 | 58 | 109 | No hit | No description |
Pfam | PF00010 | 9.8E-11 | 59 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-20 | 59 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-17 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MLSFTSVLPL PTKSNDSNRS DLEASVVKEA ESGRIAAEPE KKPRKRGRKP ANGREEPLNH 60 VEAERQRREK LNQRFYSLRA VVPNVSKMDK ASLLGDAISY INELKAKLQK AEADKEELQK 120 QIDGMSKEVG DGNVKSSVKD QKCLEQDSGV SIEVEIDVKI IGWDAMIRIQ CGKKNHPGAK 180 FMEALKELEL EVNHASLSVV NEFMIQQATV KMGNQFFTQD QLKAALMERV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_B | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_E | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_F | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_G | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_I | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_M | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
5gnj_N | 3e-34 | 53 | 130 | 2 | 79 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 48 | KKPRKRGRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively at low levels. Preferentially expressed in vascular tissues. {ECO:0000269|PubMed:12509522, ECO:0000269|PubMed:21335373}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131125.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183492 | 0.0 | AC183492.1 Brassica oleracea Contig G, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131125.2 | 1e-163 | PREDICTED: transcription factor MYC4 | ||||
Swissprot | O49687 | 1e-133 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | M4D9V3 | 1e-166 | M4D9V3_BRARP; Uncharacterized protein | ||||
STRING | Bra013263.1-P | 1e-167 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-118 | bHLH family protein |