PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131037.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 396aa    MW: 43758.4 Da    PI: 7.2212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH58.41.3e-18153202255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  XP_009131037.1 153 RSKHSATEQRRRSKINDRFQKLRQLVPNS----DQKRDKASFLLEVIEYIQFLQ 202
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-24150222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.574151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-19152220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-16153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-14153204No hitNo description
SMARTSM003532.3E-13157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMFTASGCGG GVERNVVDAA AVASGFTLWD ESGSGNKEQT RKENNAGERA NIRADVATTM  60
GQWPAQSLTN NNHLSGFSSR SSSSQGSGLK SQSFMDMIRS AKGTSQDDDL DDEEDFVMKK  120
ESSSTSQNHR VDLRVKAEAR GAGNNDPKLN TPRSKHSATE QRRRSKINDR FQKLRQLVPN  180
SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNQESA KLLNWQRNNQ QLVPEGTVTF  240
APKLEEEKNN IPILATAETL NAVTPFPLSV QSNSLFSPLI AGNPLTQLHA RVAASETVEP  300
SQSSRSHTQS LKEEEGDEHE VHEGNISISS VYSQGLVKRL REALEKSGVD LTKATISVEI  360
ELAKRSSEVS EPVSRTGNDD VKQTRKPKRL KTCNTS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131037.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533130.0AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131037.10.0PREDICTED: transcription factor BIM1-like isoform X5
SwissprotQ9LEZ31e-178BIM1_ARATH; Transcription factor BIM1
TrEMBLM4CP310.0M4CP31_BRARP; Uncharacterized protein
STRINGBra005969.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.31e-176bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]