PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009131037.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 396aa MW: 43758.4 Da PI: 7.2212

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	58.4	1.3e-18	153	202	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_009131037.1 153 RSKHSATEQRRRSKINDRFQKLRQLVPNS----DQKRDKASFLLEVIEYIQFLQ 202 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.5E-24	150	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.574	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-19	152	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-16	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.44E-14	153	204	No hit	No description
SMART	SM00353	2.3E-13	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MMFTASGCGG GVERNVVDAA AVASGFTLWD ESGSGNKEQT RKENNAGERA NIRADVATTM 60 GQWPAQSLTN NNHLSGFSSR SSSSQGSGLK SQSFMDMIRS AKGTSQDDDL DDEEDFVMKK 120 ESSSTSQNHR VDLRVKAEAR GAGNNDPKLN TPRSKHSATE QRRRSKINDR FQKLRQLVPN 180 SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNQESA KLLNWQRNNQ QLVPEGTVTF 240 APKLEEEKNN IPILATAETL NAVTPFPLSV QSNSLFSPLI AGNPLTQLHA RVAASETVEP 300 SQSSRSHTQS LKEEEGDEHE VHEGNISISS VYSQGLVKRL REALEKSGVD LTKATISVEI 360 ELAKRSSEVS EPVSRTGNDD VKQTRKPKRL KTCNTS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MMFTASGCGG GVERNVVDAA AVASGFTLWD ESGSGNKEQT RKENNAGERA NIRADVATTM  60
GQWPAQSLTN NNHLSGFSSR SSSSQGSGLK SQSFMDMIRS AKGTSQDDDL DDEEDFVMKK  120
ESSSTSQNHR VDLRVKAEAR GAGNNDPKLN TPRSKHSATE QRRRSKINDR FQKLRQLVPN  180
SDQKRDKASF LLEVIEYIQF LQEKTSKYET PYQGWNQESA KLLNWQRNNQ QLVPEGTVTF  240
APKLEEEKNN IPILATAETL NAVTPFPLSV QSNSLFSPLI AGNPLTQLHA RVAASETVEP  300
SQSSRSHTQS LKEEEGDEHE VHEGNISISS VYSQGLVKRL REALEKSGVD LTKATISVEI  360
ELAKRSSEVS EPVSRTGNDD VKQTRKPKRL KTCNTS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131037.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	0.0	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131037.1	0.0	PREDICTED: transcription factor BIM1-like isoform X5
Swissprot	Q9LEZ3	1e-178	BIM1_ARATH; Transcription factor BIM1
TrEMBL	M4CP31	0.0	M4CP31_BRARP; Uncharacterized protein
STRING	Bra005969.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	1e-176	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]