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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009131034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 508aa MW: 55997 Da PI: 7.2668 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57.9 | 1.8e-18 | 265 | 314 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_009131034.1 265 RSKHSATEQRRRSKINDRFQKLRQLVPNS----DQKRDKASFLLEVIEYIQFLQ 314 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.6E-24 | 262 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.574 | 263 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-19 | 264 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.08E-15 | 265 | 316 | No hit | No description |
Pfam | PF00010 | 6.1E-16 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-13 | 269 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MELPQSRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS QGSHLKTHDF LQPLESVGGS 60 KEETSKIDTT SEPHATPPPL KHVLPGGIGT YTISSIPYFH NHQRVPKPEL SPPMMFTASG 120 CGGGVERNVV DAAAVASGFT LWDESGSGNK EQTRKENNAG ERANIRADVA TTMGQWPAQS 180 LTNNNHLSGF SSRSSSSQGS GLKSQSFMDM IRSAKGTSQD DDLDDEEDFV MKKESSSTSQ 240 NHRDLRVKAE ARGAGNNDPK LNTPRSKHSA TEQRRRSKIN DRFQKLRQLV PNSDQKRDKA 300 SFLLEVIEYI QFLQEKTSKY ETPYQGWNQE SAKLLNWQRN NQQLVPEGTV TFAPKLEEEK 360 NNIPILATAE TLNAVTPFPL SVQSNSLFSP LIAGNPLTQL HARVAASETV EPSQSSRSHT 420 QSLKEEEGDE HEVHEGNISI SSVYSQGLVK RLREALEKSG VDLTKATISV EIELAKRSSE 480 VSEPVSRTGN DDVKQTRKPK RLKTCNTS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.24784 | 0.0 | silique |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009131034.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241004 | 0.0 | AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131034.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X2 | ||||
Swissprot | Q9LEZ3 | 0.0 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | M4CP31 | 0.0 | M4CP31_BRARP; Uncharacterized protein | ||||
STRING | Bra005969.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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