PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009131033.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 509aa MW: 56096.1 Da PI: 7.2668

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009131033.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.9	1.8e-18	266	315	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lr+l+P++ ++K +Ka+ L +++eYI+ Lq XP_009131033.1 266 RSKHSATEQRRRSKINDRFQKLRQLVPNS----DQKRDKASFLLEVIEYIQFLQ 315 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.6E-24	263	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.574	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-19	265	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-16	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.94E-15	266	317	No hit	No description
SMART	SM00353	2.3E-13	270	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MELPQSRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS QGSHLKTHDF LQPLESVGGS 60 KEETSKIDTT SEPHATPPPL KHVLPGGIGT YTISSIPYFH NHQRVPKPEL SPPMMFTASG 120 CGGGVERNVV DAAAVASGFT LWDESGSGNK EQTRKENNAG ERANIRADVA TTMGQWPAQS 180 LTNNNHLSGF SSRSSSSQGS GLKSQSFMDM IRSAKGTSQD DDLDDEEDFV MKKESSSTSQ 240 NHRVDLRVKA EARGAGNNDP KLNTPRSKHS ATEQRRRSKI NDRFQKLRQL VPNSDQKRDK 300 ASFLLEVIEY IQFLQEKTSK YETPYQGWNQ ESAKLLNWQR NNQQLVPEGT VTFAPKLEEE 360 KNNIPILATA ETLNAVTPFP LSVQSNSLFS PLIAGNPLTQ LHARVAASET VEPSQSSRSH 420 TQSLKEEEGD EHEVHEGNIS ISSVYSQGLV KRLREALEKS GVDLTKATIS VEIELAKRSS 480 EVSEPVSRTG NDDVKQTRKP KRLKTCNTS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MELPQSRPFK AQGREPTHDF LSLCSHSTVQ TDPKPTPSSS QGSHLKTHDF LQPLESVGGS  60
KEETSKIDTT SEPHATPPPL KHVLPGGIGT YTISSIPYFH NHQRVPKPEL SPPMMFTASG  120
CGGGVERNVV DAAAVASGFT LWDESGSGNK EQTRKENNAG ERANIRADVA TTMGQWPAQS  180
LTNNNHLSGF SSRSSSSQGS GLKSQSFMDM IRSAKGTSQD DDLDDEEDFV MKKESSSTSQ  240
NHRVDLRVKA EARGAGNNDP KLNTPRSKHS ATEQRRRSKI NDRFQKLRQL VPNSDQKRDK  300
ASFLLEVIEY IQFLQEKTSK YETPYQGWNQ ESAKLLNWQR NNQQLVPEGT VTFAPKLEEE  360
KNNIPILATA ETLNAVTPFP LSVQSNSLFS PLIAGNPLTQ LHARVAASET VEPSQSSRSH  420
TQSLKEEEGD EHEVHEGNIS ISSVYSQGLV KRLREALEKS GVDLTKATIS VEIELAKRSS  480
EVSEPVSRTG NDDVKQTRKP KRLKTCNTS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.24784	0.0	silique

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009131033.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	0.0	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131033.1	0.0	PREDICTED: transcription factor BIM1-like isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	M4CP31	0.0	M4CP31_BRARP; Uncharacterized protein
STRING	Bra005969.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]