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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009131005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
MYB |
| Protein Properties |
Length: 330aa MW: 37140.9 Da PI: 4.5387 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009131005.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.6 | 5.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++l+ + +++G g W+ I+++ g++R++k+c++rw +yl
XP_009131005.1 14 KGAWTIEEDKKLISYLHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 45.3 | 2e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg ++ eE+++++ +++ G++ W+ Iar+++ +Rt++++k++w++
XP_009131005.1 67 RGEFSYEEEQIIIMLHASRGNK-WSVIARHLP-KRTDNEIKNYWNTN 111
899*******************.*********.***********986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MSRKPCCVGE GLKKGAWTIE EDKKLISYLH EHGEGGWRDI PQKAGLKRCG KSCRLRWANY 60
LKPDIKRGEF SYEEEQIIIM LHASRGNKWS VIARHLPKRT DNEIKNYWNT NLRKRLIDQG 120
NDPLTHKPLA STPEPATPKT SDLQDDSNPS NLDEQYSHSG SMSPESLPLS SNSCNILEIS 180
NSDETPRNYG SFNSKKLSST SELLNKVATR AASMGNIISA SMEGTLIPST TLSPPCLNDG 240
LSETSHFQMD EFDIDMNFDF NNSEHDFSEF LEQFSNNAAE EADNIIGYDQ DLLFSDVSST 300
RVDEDGMTNI PGWSNYLLDD SEFSYDTNQD
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Primarily present around the midvein in seedlings. Accumulates gradually in expanding leaves, reaching a maximum in fully expanded leaves in the primary vein. {ECO:0000269|PubMed:18042203}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in both vegetative and generative organs. Mostly present in seedlings, inflorescences, roots and stems, and, to a lower extent, in leaves (in midvein and trichomes) and siliques. {ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:9839469}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Slightly induced by gibberellic acid (GA), jasmonic acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment. Transiently repressed by salicylic acid (SA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX316031 | 0.0 | JX316031.1 Brassica juncea R2R3 DNA binding transcription factor MYB29-1 (MYB29-1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
Bioinformatics, 2012. 28(6): p. 815-22
[PMID:22271267] - Araki R, et al.
Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production.
Plant Biotechnol. J., 2013. 11(8): p. 1017-27
[PMID:23910994] - Guo R, et al.
Jasmonic acid and glucose synergistically modulate the accumulation of glucosinolates in Arabidopsis thaliana.
J. Exp. Bot., 2013. 64(18): p. 5707-19
[PMID:24151308] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Frerigmann H,Gigolashvili T
Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
Front Plant Sci, 2014. 5: p. 626
[PMID:25426131] - Burow M, et al.
The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis.
Mol Plant, 2015. 8(8): p. 1201-12
[PMID:25758208] - Martínez-Ballesta M, et al.
The impact of the absence of aliphatic glucosinolates on water transport under salt stress in Arabidopsis thaliana.
Front Plant Sci, 2015. 6: p. 524
[PMID:26236322] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Mostafa I, et al.
New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutants.
J Proteomics, 2016. 138: p. 1-19
[PMID:26915584] - Smith JD,Woldemariam MG,Mescher MC,Jander G,De Moraes CM
Glucosinolates from Host Plants Influence Growth of the Parasitic Plant Cuscuta gronovii and Its Susceptibility to Aphid Feeding.
Plant Physiol., 2016. 172(1): p. 181-97
[PMID:27482077] - Zhang X, et al.
The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.
Plant Physiol., 2017. 173(3): p. 1824-1843
[PMID:28167700] - Mostafa I, et al.
Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29.
Front Plant Sci, 2017. 8: p. 534
[PMID:28443122] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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