PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130983.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 759aa    MW: 85221.9 Da    PI: 6.4626
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.12.9e-21226279155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kp+++Wt  LH+ F++a++ + G +kA+Pk+ile m+++ Lt+e+++SHLQkYR+
  XP_009130983.1 226 KPKIKWTDCLHDLFLQAIRYI-GLDKAVPKKILEYMNLPYLTRENIASHLQKYRI 279
                     79*******************.********************************6 PP
2Response_reg66.31.4e-22181331109
                     EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     v++vdD+p+++ ++ ++lek +y     +e+   +++d+ eal +lk+++  +Dli++D  mp+m+Gl+l k+i++e  ++p+iv+++ ++    
  XP_009130983.1  18 VMVVDDDPVFLGVVSRMLEKFKYrdpsfKEISviAVKDPIEALSTLKTQRhnIDLIVTDYYMPHMNGLQLKKQITREFGNIPVIVMSSDSN--IE 110
                     89*****************66664444444444499**********777777**********************99999********7776..88 PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                     +e l  Gak fl Kp+ p ++ +
  XP_009130983.1 111 HESLACGAKCFLPKPIRPTDIPQ 133
                     99****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-2715145No hitNo description
SMARTSM004481.8E-2016135IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.7E-2516151IPR011006CheY-like superfamily
PROSITE profilePS5011034.9817139IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.2E-1918134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.67E-2319139No hitNo description
SuperFamilySSF466891.02E-16224283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-21225283IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-23226279IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MAFAQSFDNQ SSDLRINVMV VDDDPVFLGV VSRMLEKFKY RDPSFKEISV IAVKDPIEAL  60
STLKTQRHNI DLIVTDYYMP HMNGLQLKKQ ITREFGNIPV IVMSSDSNIE HESLACGAKC  120
FLPKPIRPTD IPQIYQVALT YKRNDKSILW TEHNYRDTDV SIPQQIQLHT EQANVLKTNN  180
KRFSPISDSR PVNSSNGSYV STDGSGENRK RKSNGGSGDD SRPLKKPKIK WTDCLHDLFL  240
QAIRYIGLDK AVPKKILEYM NLPYLTRENI ASHLQKYRIF LRKVAEQGFS CSRMLPTKGI  300
DSIFLQAHLR DPCYNNYASS SSSLYDTTIN NRSFYSKPIQ SYGQSRLLSN TAEPVRFNQM  360
PYNYMNRSST YEPRGIGSNL TIPTISNLSF PIQPSQNEGR RSLFEPTVMA NKTVQTSQAM  420
GFGQHGLSAI NGNSFNNNMV SSYGRLTPTQ PGMMSYENLT PSQPGVRSYV NSTFDQPGMN  480
NQRSLTPDQQ GMRSYRSLTS NQLGVNMNGS FSQTPNQPGM SSYGISTSNQ PRMNNHGSLT  540
LDQQVMSSNG SLTSNQLGMS SHGSLYPNQP GLNSYGSVTY NARVNIHESL TPNQPGASNF  600
SYGMQMFLNN ENTTYKPQAH DNATTQPNLE IPTLENLSLC DELLCEISNF QIDHNKQQEE  660
AVSTNKFELP ANFETELNQF FSLEENGDGN FVNINQGRSD GETSNIVAAP ETNYPVFNMN  720
PNHEQEQGVP GFVDWSSLDP KDFANEYDFV DSLLTNDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18225285464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130983.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A397ZRE90.0A0A397ZRE9_BRACM; Uncharacterized protein
TrEMBLM4CNZ00.0M4CNZ0_BRARP; Uncharacterized protein
STRINGBra005928.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21