PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130954.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 322aa    MW: 36032.4 Da    PI: 9.4711
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.5e-18172226256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_009130954.1 172 RKKLRLSKDQSAFLEDSFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 226
                     577789***********************************************98 PP
2HD-ZIP_I/II128.72.3e-41172262192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eLr +lk
  XP_009130954.1 172 RKKLRLSKDQSAFLEDSFKEHNTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCESLTDENRRLQKEVKELR-ALK 262
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.601168228IPR001356Homeobox domain
SMARTSM003895.9E-16170232IPR001356Homeobox domain
SuperFamilySSF466893.94E-18171237IPR009057Homeodomain-like
PfamPF000463.8E-15172226IPR001356Homeobox domain
CDDcd000868.38E-16172229No hitNo description
Gene3DG3DSA:1.10.10.602.0E-17177226IPR009057Homeodomain-like
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
SMARTSM003405.1E-26228271IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-10228262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPALYLGDN TNKFSFLEKP SKIPNNPSAS STSTSDKNIG FNMGLDVLGF GSQRSLSSSS  60
SPSVEDEKKY KSKLTQRANY SDGVRVSSSV DPSLQLQLHL PWIPENRAPT VAEPSMPVSP  120
PDSVTSSFRL DFGIKSYGYE KRNNKRDMED EVEKSTSRAS NEDNDDENGA IRKKLRLSKD  180
QSAFLEDSFK EHNTLNPKQK IALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKKC  240
CESLTDENRR LQKEVKELRA LKTSSPFYMQ RPATTLTMCP SCERVATSSS QPSTSAAHID  300
LSTSSFHSPL IPVKPGPAKQ AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220228RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009130954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893671e-178AC189367.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046M04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130954.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-163HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLM4CNW90.0M4CNW9_BRARP; Uncharacterized protein
STRINGBra005907.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-146homeobox from Arabidopsis thaliana