 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009130926.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
B3 |
| Protein Properties |
Length: 279aa MW: 31877.8 Da PI: 6.3181 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009130926.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 103.4 | 1.2e-32 | 49 | 155 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+k ltpsdv+k++rlv+pk++ae++ ++ +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+ D+v F+++++
XP_009130926.1 49 FEKSLTPSDVGKLNRLVIPKQHAEKYfplntiisNNAEEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKQLDPADVVFFQRQRS 143
99*******************************9888899***************************************************9988 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
++++l+++++r+
XP_009130926.1 144 DSRRLFIGWRRR 155
9999******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MSVNHYSTDH HQVHHHHTLF LQNLHTTDTS EPTTTAATSL REDQKEYLFE KSLTPSDVGK 60
LNRLVIPKQH AEKYFPLNTI ISNNAEEKGM LLSFEDESGK CWRFRYSYWN SSQSYVLTKG 120
WSRYVKDKQL DPADVVFFQR QRSDSRRLFI GWRRRGQGSS SAANTTSYSS SMTAPPYSNY 180
SNRPAHSEYS HYGAAVATAT ETHFIPSSSA VGSSRTVRLF GVNLECQMDE DEGDDSVATA 240
AAAECPRQDS YYDQNMLEID EDERSKDVTR NDQDFRHSL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 8e-50 | 45 | 155 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 8e-50 | 45 | 155 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB006700 | 2e-77 | AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15. |
| GenBank | CP002688 | 2e-77 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
